PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005737m
Common NameCISIN_1g005737mg, LOC102617899
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 681aa    MW: 75365.7 Da    PI: 6.6182
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005737mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16328387155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  orange1.1g005737m 328 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 387
                        78*******************988886678446*************************98 PP

2AP246.49.9e-15430481155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  orange1.1g005737m 430 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 481
                        57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-16328397IPR016177DNA-binding domain
PfamPF008476.8E-13328387IPR001471AP2/ERF domain
CDDcd000187.34E-22328395No hitNo description
SMARTSM003802.6E-29329401IPR001471AP2/ERF domain
PROSITE profilePS5103219.203329395IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-16329396IPR001471AP2/ERF domain
PRINTSPR003679.1E-6330341IPR001471AP2/ERF domain
PfamPF008471.5E-9430481IPR001471AP2/ERF domain
CDDcd000185.88E-25430491No hitNo description
SuperFamilySSF541712.16E-17430490IPR016177DNA-binding domain
SMARTSM003803.9E-34431495IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17431489IPR001471AP2/ERF domain
PROSITE profilePS5103218.834431489IPR001471AP2/ERF domain
PRINTSPR003679.1E-6471491IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MKSMNNDDTN NNNINNDNWL GFSLSPDIKM EVPQDPHPQT QPSSPSTSAV MPPPSVPSSL  60
FQCLPYGFYY GFEGENSSLY SPLPVMPLKS DGSLCIMEAL SRSQQPQGMV STTATTTSTP  120
KLEDFFGGAT MGTHHYESND REAMALSLDS MYYHHNPENE PSSQNCLNQL EENSRHQQQQ  180
IQDQQYQYYT TGFRSHEMLL GDKGKEIQVA DCNLQLPAMA DDGMHGMKNW VSRNYATEQA  240
MQQKLLGCMS HNGGESGDIS AMPYGDLQSL SLSMSPASQS SCVTGSQQVS HAVSNCAAVE  300
RKKRGSEKMD QKQVAHRKSL DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG  360
RQVYLGGYDM EEKAARAYDL AALKYWGPST HINFPLENYQ KELEEMKNMN RQEYVAHLRR  420
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  480
GVTAVTNFDI TRYDVERIMA SSNLLAGELA RRNKEMGPGN DAPNQNPSAH TGNGDLILSQ  540
KDNESDPPDW KLVSYQSSQQ LEHKAPNMSI INNYNAHLFS LAPDSVIAMD AMGSAQQEVE  600
SSAKMGNHLS NASSLVTSLS SSKEGSPDGS SVPIPFAMPR TASKLLTSPT NTVNSWIPSA  660
ELRPALSVPH MPVFAAWTDA *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466424.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-165ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A067GTU40.0A0A067GTU4_CITSI; Uncharacterized protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-140AP2 family protein